• Retention Time Alignment Algorithms for LC/MS Data must consider Nonlinear Shifts; Podwojski K, Fritsch A, Chamrad DC, Paul W, Sitek B, Mutzel P, Stephan C, Meyer HE, Urfer W, Ickstadt K, Rahnenfuehrer J.; Bioinformatics. 2009 Jan 28. [Epub ahead of print] (download)

  • Manageing Proteomics Data: From Generation and Data Warehousing to Central Data Repository; Thiele H , Glandorf J, Hufnagel P, Koerting G, Blueggel M; J. Proteomics Bioinform 2008(1), 485-507 (download)

  • Proteomics Potential; Thiele, H, Blueggel M; European Biopharmaceutical Review; Nov 2008

  • Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase; Stephan C, Reidegeld KA, Hamacher M, van Hall A, Marcus K, Taylor C, Jones P, Muller M, Apweiler R, Martens L, Korting G, Chamrad DC, Thiele H, Bluggel M, Parkinson D, Binz PA, Lyall A, Meyer HE; Proteomics. 2006 Sep; 6 (18): 5015-29. (download)

  • The power of cooperative investigation: Summary and comparison of the HUPO Brain Proteome Project pilot study results; Reidegeld KA, Muller M, Stephan C, Bluggel M, Hamacher M, Martens L, Korting G, Chamrad DC, Parkinson D, Apweiler R, Meyer HE, Marcus K.; Proteomics. 2006 Sep; 6 (18): 4997-5014. (download)

  • Functional annotation of proteins identified in human brain during the HUPO Brain Proteome Project pilot study; Mueller M, Martens L, Reidegeld KA, Hamacher M, Stephan C, Blueggel M, Korting G, Chamrad D, Scheer C, Marcus K, Meyer HE, Apweiler R.; Proteomics. 2006 Sep; 6 (18): 5059-75. (download)

  • Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data; Chamrad DC, Korting G, Schafer H, Stephan C, Thiele H, Apweiler R, Meyer HE, Marcus K, Bluggel M.; Proteomics. 2006 Sep; 6 (18): 5048-58. (download)

  • Bioinformatics in Proteomics; Martin Blueggel, Daniel Chamrad, Helmut E. Meyer; Current Pharmaceutical Biotechnology 5, 2004, 79-88 . (download)

  • Evaluation of algorithms for protein identification from sequence databases using mass spectrometry data; Daniel C. Chamrad, Gerhard Koerting, Kai Stuehler, Helmut E. Meyer, Joachim Klose, Martin Blueggel; Proteomics 2004, 4, 619-628. (download)

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